We are continously adding new capabilities and expand our expertise.
For optimal results we may need hand tune the various parameters to be most appropriate for your project. You will need to Contact us to discuss the details.
We primarily use the mothur package to automate inital data analysis. The default report will include:
Currently, the ChIP-seq data analysis uses the solid pipeline to perform genome alignments in high performance servers (lionxi, hammer) using the SHRiMP mapping utility. The data from the log files in the alignment runs are compiled to generate the analysis report. The initial (default) report would include:
Due to the differing nature of each alignment run, the requests should be made by filling out the data information sheet.